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Pipeline to explore information on genome editing using large language models and genome editing meta-database.
Suzuki T ; Bono H
Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

Steering veridical large language model analyses by correcting and enriching generated database queries: first steps toward ChatGPT bioinformatics.
Cinquin O
Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

A case study using sewage metagenomic data for assessment of text-to-SQL capabilities in large language models.
Becsei Á ; Stéger J ; Visontai D ; et al.
Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

A Relational Algebra Query Language for Programming Relational Databases
McMaster, Kirby ; Sambasivam, Samuel ; Anderson, Nicole
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Verification and reproducible curation of the BioModels repository.
Smith LP ; Malik-Sheriff RS ; Nguyen TVN ; et al.
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

NutriGen: Personalized Meal Plan Generator Leveraging Large Language Models to Enhance Dietary and Nutritional Adherence.
Khamesian S ; Arefeen A ; Carpenter SM ; et al.
Publisher: [IEEE] Country of Publication: United States NLM ID: 101763872 Publication Model: Print Cited Medium: Internet ISSN: 2694-0604 (Electronic) Linking ISSN: 23757477 NLM ISO Abbreviation: Annu Int Conf IEEE Eng Med Biol Soc Subsets: MEDLINE

LitSumm: large language models for literature summarization of noncoding RNAs.
Green A ; Ribas CE ; Ontiveros-Palacios N ; et al.
Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

Leveraging Large Language Models for Cancer Variant Classification: A Comparative Study of GPT-4o, LLaMA 3, and Qwen 2.5.
Lin KH ; Chen PC ; Kuo CT ; et al.
Publisher: IOS Press Country of Publication: Netherlands NLM ID: 9214582 Publication Model: Print Cited Medium: Internet ISSN: 1879-8365 (Electronic) Linking ISSN: 09269630 NLM ISO Abbreviation: Stud Health Technol Inform Subsets: MEDLINE

Sharing Neuroimaging Data with Squirrel - A Relational Data Format to Store Raw to Analyzed Data and Everything in Between.
Book GA ; Calhoun VD ; Stevens MC ; et al.
Publisher: Humana Press, Inc Country of Publication: United States NLM ID: 101142069 Publication Model: Electronic Cited Medium: Internet ISSN: 1559-0089 (Electronic) Linking ISSN: 15392791 NLM ISO Abbreviation: Neuroinformatics Subsets: MEDLINE

Biomedical Information Integration via Adaptive Large Language Model Construction.
Xue X ; Wu ME ; Khan F
Publisher: Institute of Electrical and Electronics Engineers Country of Publication: United States NLM ID: 101604520 Publication Model: Print Cited Medium: Internet ISSN: 2168-2208 (Electronic) Linking ISSN: 21682194 NLM ISO Abbreviation: IEEE J Biomed Health Inform Subsets: MEDLINE

Large Language Model-Based Critical Care Big Data Deployment and Extraction: Descriptive Analysis.
Yang Z ; Xu SS ; Liu X ; et al.
Publisher: JMIR Publications Country of Publication: Canada NLM ID: 101645109 Publication Model: Electronic Cited Medium: Internet ISSN: 2291-9694 (Electronic) Linking ISSN: 22919694 NLM ISO Abbreviation: JMIR Med Inform Subsets: MEDLINE

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Facilitating analysis of open neurophysiology data on the DANDI Archive using large language model tools.
Magland JF ; Ly R ; Rübel O ; et al.
Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Evaluation of large language models for discovery of gene set function.
Hu M ; Alkhairy S ; Lee I ; et al.
Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

Accelerating primer design for amplicon sequencing using large language model-powered agents.
Wang Y ; Hou Y ; Yang L ; et al.
Publisher: Springer Nature Country of Publication: England NLM ID: 101696896 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2157-846X (Electronic) Linking ISSN: 2157846X NLM ISO Abbreviation: Nat Biomed Eng Subsets: MEDLINE

Open-source large language models in action: A bioinformatics chatbot for PRIDE database.
Bai J ; Kamatchinathan S ; Kundu DJ ; et al.
Publisher: Wiley-VCH Country of Publication: Germany NLM ID: 101092707 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1615-9861 (Electronic) Linking ISSN: 16159853 NLM ISO Abbreviation: Proteomics Subsets: MEDLINE

Proceedings of the 14th International Symposium on Database Programming Languages (DBPL 2013), August 30, 2013, Riva del Garda, Trento, Italy
Green, Todd J. ; Schmitt, Alan

AutoQUEST: A Chain-of-Thought Pipeline for Automated Question Generation and Validation in MAUDE Research.
Hua L ; Gong Y
Publisher: IOS Press Country of Publication: Netherlands NLM ID: 9214582 Publication Model: Print Cited Medium: Internet ISSN: 1879-8365 (Electronic) Linking ISSN: 09269630 NLM ISO Abbreviation: Stud Health Technol Inform Subsets: MEDLINE

Pre-Meta: priors-augmented retrieval for LLM-based metadata generation.
Tinn P ; Sørbø S ; Jiang S ; et al.
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Benchmarking large language models for identifying transcription factor regulatory interactions.
Noel L ; Hsiao YW ; He Y ; et al.
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE