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Introducing Python Programming into Undergraduate Biology
DAVID, ANDREW A.
The American Biology Teacher, 2021 Jan 01. 83(1), 33-41.

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2

From Zero to Python in 10.5 Hours: Building Foundational Programming Skills with Marine Biology Graduate Students and Researchers in an Introductory Workshop Series.
Timms, Geoffrey P. ; Guyon, Jeffrey R.
Science & Technology Libraries. 2023, Vol. 42 Issue 3, p371-390. 20p.

Marine biology Biology students Graduate students Python programming langu... Scientific visualization Active learning
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3

Teaching Python Programming for Bioinformatics with Jupyter Notebook in the Post-COVID-19 Era
Gupta, Yash Munnalal ; Kirana, Satwika Nindya ; Homchan, Somjit ; et al.
3

Programming Languages Teaching Methods Computer Software Genetics Laboratory Experiments COVID-19 …
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5

Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.
Silberberg, Mauro ; Hermjakob, Henning ; Malik-Sheriff, Rahuman S ; et al.
Bioinformatics. Aug2024, Vol. 40 Issue 8, p1-6. 6p.

PYTHON programming langu... SYSTEMS biology DYNAMICAL systems CHEMICAL engineering SOURCE code
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6

Book Review: Python programming for Biology (ISBN 978-0-521-72009-0)
Alberto eMarin-Sanguino
Frontiers in Genetics, Vol 7 (2016)

Computational Biology Systems Biology bioinformatics python Programming Languages Genetics …
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7

Lemon-Flavored Gummy Candies: Sourness, Flavor and Overall Acceptance Optimization Using Lattice-Simplex Mixture Design Implemented with Python Programming Language
Jorge Adahir Cruz-Enriquez ; Laura García-Curiel ; Jesús Guadalupe Pérez-Flores ; et al.
Biology and Life Sciences Forum, Vol 40, Iss 1, p 41 (2025)

confectionery industry gummy candies simplex–lattice mixture design food additives Python …
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8

Effect of Block-Based Python Programming Environment on Programming Learning
Yongcheon Kim ; Jamee Kim ; Wongyu Lee
Applied Sciences, Vol 13, Iss 19, p 10898 (2023)

block-based python progr... programming environment programming learning Technology Engineering (General). C... TA1-2040 …
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10

TRAMbio: a flexible python package for graph rigidity analysis of macromolecules.
Handke, Nicolas ; Gatter, Thomas ; Reinhardt, Franziska ; et al.
BMC Bioinformatics. 10/28/2025, Vol. 26 Issue 1, p1-23. 23p.

MOLECULAR biology PROTEIN conformation CONSTRAINT algorithms PYTHON programming langu... PROTEIN folding MACROMOLECULES
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11

Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python.
Lubbock, Alexander L R ; Lopez, Carlos F
Bioinformatics. 10/15/2022, Vol. 38 Issue 20, p4823-4825. 3p.

SYSTEMS biology PYTHON programming langu... METADATA INTERNET servers HETEROGENEOUS computing COMPUTATIONAL biology
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12

I2b2-etl: Python application for importing electronic health data into the informatics for integrating biology and the bedside platform.
Wagholikar, Kavishwar B ; Ainsworth, Layne ; Zelle, David ; et al.
Bioinformatics. 10/15/2022, Vol. 38 Issue 20, p4833-4836. 4p.

PYTHON programming langu... MEDICAL informatics COLLEGE majors HEALTH facilities CONSORTIA BIOLOGY
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14

VeVaPy, a Python Platform for Efficient Verification and Validation of Systems Biology Models with Demonstrations Using Hypothalamic-Pituitary-Adrenal Axis Models.
Parker, Christopher ; Nelson, Erik ; Zhang, Tongli
Entropy. Dec2022, Vol. 24 Issue 12, p1747. 30p.

HYPOTHALAMIC-pituitary-a... SYNTHETIC biology PYTHON programming langu... SYSTEMS biology COMMUNITIES SOURCE code
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15

WSIC: a Python package and command-line interface for fast whole slide image conversion.
Pocock, Johnathan ; Raza, Shan E Ahmed ; Minhas, Fayyaz ; et al.
Bioinformatics Advances. 2023, Vol. 3 Issue 1, p1-4. 4p.

PYTHON programming langu... COMPUTATIONAL biology BIOINFORMATICS METADATA OPEN source software
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16

Lowering Barriers to Coding: Incorporating Generative Artificial Intelligence to Support Data Analysis in a Biology Class.
Davinack, Andrew A.
American Biology Teacher (University of California Press). Nov/Dec2025, Vol. 87 Issue 9, p547-552. 6p.

GENERATIVE artificial in... DATA analysis CHATBOTS PYTHON programming langu... STUDENT engagement EDUCATIONAL outcomes …
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17

gMCSpy: efficient and accurate computation of genetic minimal cut sets in Python.
Rodriguez-Flores, Carlos J ; Barrena, Naroa ; Olaverri-Mendizabal, Danel ; et al.
Bioinformatics. Jun2024, Vol. 40 Issue 6, p1-4. 4p.

GENETIC engineering SYSTEMS biology PYTHON programming langu... METABOLIC models RESEARCH personnel BIOTECHNOLOGY
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18

Observations of the surface current field in morphologically complex environments using drones.
Macedo, Flavia ; Schettini, Carlos Augusto
Ocean & Coastal Research. 2025, Vol. 73, p1-18. 18p.

Acoustic Doppler current... Water currents Commercial drones Tracers (Biology) Python programming langu... Acquisition of data
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19

pyResearchInsights—An open‐source Python package for scientific text analysis.
Shetty, Sarthak J. ; Ramesh, Vijay
Ecology & Evolution (20457758). Oct2021, Vol. 11 Issue 20, p13920-13929. 10p.

Biodiversity conservatio... Biodiversity Landscape ecology Plant ecology Conservation biology Python programming langu... …
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20

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.
Costa-Gomes, Beatriz ; Greer, Joel ; Juraschko, Nikolai ; et al.
Acta Crystallographica: Section F, Structural Biology Communications. Oct2025, Vol. 81 Issue 10, p441-450. 10p.

DATA curation MACHINE learning PYTHON programming langu... MOLECULAR biology OPEN source software ELECTRON microscopy …
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