Treffer: MedShapeNet - a large-scale dataset of 3D medical shapes for computer vision.
Title:
MedShapeNet - a large-scale dataset of 3D medical shapes for computer vision.
Authors:
Li J; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Institute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.; Computer Algorithms for Medicine Laboratory (Cafe), Graz, Austria., Zhou Z; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Yang J; Computer Vision Laboratory, Swiss Federal Institute of Technology Lausanne (EPFL), Lausanne, Switzerland., Pepe A; Institute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.; Computer Algorithms for Medicine Laboratory (Cafe), Graz, Austria., Gsaxner C; Institute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.; Computer Algorithms for Medicine Laboratory (Cafe), Graz, Austria.; Department of Oral and Maxillofacial Surgery, University Hospital RWTH Aachen, Aachen, Germany., Luijten G; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Institute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.; Computer Algorithms for Medicine Laboratory (Cafe), Graz, Austria.; Center for Virtual and Extended Reality in Medicine (ZvRM), University Hospital Essen, University Medicine Essen, Essen, Germany., Qu C; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Zhang T; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Chen X; Department of Radiology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China., Li W; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Wodzinski M; Department of Measurement and Electronics, AGH University of Science and Technology, Krakow, Poland.; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland., Friedrich P; Center for Medical Image Analysis & Navigation (CIAN), Department of Biomedical Engineering, University of Basel, Allschwil, Switzerland., Xie K; Department of Computer Science and Engineering, University at Buffalo, SUNY, NY, 14260, USA., Jin Y; Institute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.; Computer Algorithms for Medicine Laboratory (Cafe), Graz, Austria.; Research Center for Connected Healthcare Big Data, ZhejiangLab, Hangzhou, Zhejiang, China., Ambigapathy N; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Nasca E; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Solak N; Institute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.; Computer Algorithms for Medicine Laboratory (Cafe), Graz, Austria., Melito GM; Institute of Mechanics, Graz University of Technology, Graz, Austria., Vu VD; Department of Diagnostic and Interventional Radiology, University Hospital Giessen, Justus-Liebig-University Giessen, Giessen, Germany., Memon AR; Department of Mechanical Engineering, Mehran University of Engineering and Technology, Jamshoro, Sindh, Pakistan.; Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, People's Republic of China., Schlachta C; Canadian Surgical Technologies & Advanced Robotics (CSTAR), University Hospital, London, Canada., De Ribaupierre S; Canadian Surgical Technologies & Advanced Robotics (CSTAR), University Hospital, London, Canada., Patel R; Canadian Surgical Technologies & Advanced Robotics (CSTAR), University Hospital, London, Canada., Eagleson R; Canadian Surgical Technologies & Advanced Robotics (CSTAR), University Hospital, London, Canada., Chen X; State Key Laboratory of Mechanical System and Vibration, School of Mechanical Engineering, Institute of Biomedical Manufacturing and Life Quality Engineering, Shanghai Jiao Tong University, Shanghai, People's Republic of China.; Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, People's Republic of China., Mächler H; Department of Cardiac Surgery, Medical University Graz, Graz, Austria., Kirschke JS; Geschäftsführender Oberarzt Abteilung für Interventionelle und Diagnostische Neuroradiologie, Universitätsklinikum der Technischen Universität München, München, Germany., de la Rosa E; icometrix, Leuven, Belgium.; Department of Informatics, Technical University of Munich, Garching bei München, Germany., Christ PF; Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland., Li HB; Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland., Ellis DG; Department of Neurosurgery, University of Nebraska Medical Center, Omaha, NE, USA., Aizenberg MR; Department of Neurosurgery, University of Nebraska Medical Center, Omaha, NE, USA., Gatidis S; University Hospital of Tuebingen Diagnostic and Interventional Radiology Medical Image and Data Analysis (MIDAS.lab), Tuebingen, Germany., Küstner T; University Hospital of Tuebingen Diagnostic and Interventional Radiology Medical Image and Data Analysis (MIDAS.lab), Tuebingen, Germany., Shusharina N; Division of Radiation Biophysics, Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA., Heller N; University of Minnesota, Minneapolis, MN, USA., Andrearczyk V; Institute of Informatics, HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland., Depeursinge A; Institute of Informatics, HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland.; Department of Nuclear Medicine and Molecular Imaging, Lausanne University Hospital (CHUV), Lausanne, Switzerland., Hatt M; LaTIM, INSERM UMR 1101, Univ Brest, Brest, France., Sekuboyina A; Department of Informatics, Technical University of Munich, Garching bei München, Germany., Löffler MT; Department of Neuroradiology, Klinikum Rechts der Isar, Munich, Germany., Liebl H; Department of Neuroradiology, Klinikum Rechts der Isar, Munich, Germany., Dorent R; King's College London, Strand, London, UK.; Department of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA., Vercauteren T; King's College London, Strand, London, UK., Shapey J; King's College London, Strand, London, UK., Kujawa A; King's College London, Strand, London, UK., Cornelissen S; Elisabeth-TweeSteden Hospital, Tilburg, Netherlands.; Video Coding & Architectures Research Group, Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands., Langenhuizen P; Elisabeth-TweeSteden Hospital, Tilburg, Netherlands.; Video Coding & Architectures Research Group, Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands., Ben-Hamadou A; Centre de Recherche en Numérique de Sfax, Laboratory of Signals, Systems, Artificial Intelligence and Networks, Sfax, Tunisia.; Udini, Aix-en-Provence, France., Rekik A; Centre de Recherche en Numérique de Sfax, Laboratory of Signals, Systems, Artificial Intelligence and Networks, Sfax, Tunisia.; Udini, Aix-en-Provence, France., Pujades S; Inria, Université Grenoble Alpes, CNRS, Grenoble, France., Boyer E; Inria, Université Grenoble Alpes, CNRS, Grenoble, France., Bolelli F; 'Enzo Ferrari' Department of Engineering, University of Modena and Reggio Emilia, Modena, Italy., Grana C; 'Enzo Ferrari' Department of Engineering, University of Modena and Reggio Emilia, Modena, Italy., Lumetti L; 'Enzo Ferrari' Department of Engineering, University of Modena and Reggio Emilia, Modena, Italy., Salehi H; Department of Artificial Intelligence in Medical Sciences, Faculty of Advanced Technologies in Medicine, Iran University of Medical Sciences, Tehran, Iran., Ma J; Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada.; Peter Munk Cardiac Centre, University Health Network, Toronto, ON, Canada.; Vector Institute, Toronto, ON, Canada., Zhang Y; Shanghai AI Laboratory, Shanghai, People's Republic of China., Gharleghi R; School of Mechanical and Manufacturing Engineering, UNSW, Sydney, NSW, Australia., Beier S; School of Mechanical and Manufacturing Engineering, UNSW, Sydney, NSW, Australia., Sowmya A; School of Computer Science and Engineering, UNSW, Sydney, NSW, Australia., Garza-Villarreal EA; Institute of Neurobiology, Universidad Nacional Autónoma de México Campus Juriquilla, Querétaro, Mexico., Balducci T; Institute of Neurobiology, Universidad Nacional Autónoma de México Campus Juriquilla, Querétaro, Mexico., Angeles-Valdez D; Institute of Neurobiology, Universidad Nacional Autónoma de México Campus Juriquilla, Querétaro, Mexico.; Department of Biomedical Sciences of Cells and Systems, Cognitive Neuroscience Center, University Medical Center Groningen, University of Groningen, Groningen, Netherlands., Souza R; Advanced Imaging and Artificial Intelligence Lab, Electrical and Software Engineering Department, The Hotchkiss Brain Institute, University of Calgary, Calgary, Canada., Rittner L; Medical Image Computing Lab, School of Electrical and Computer Engineering (FEEC), University of Campinas, Campinas, Brazil., Frayne R; Radiology and Clinical Neurosciences Departments, The Hotchkiss Brain Institute, University of Calgary, Calgary, Canada.; Seaman Family MR Research Centre, Foothills Medical Center, Calgary, Canada., Ji Y; University of Hongkong, Pok Fu Lam, Hong Kong, People's Republic of China., Ferrari V; Dipartimento di Ingegneria dell'Informazione, University of Pisa, Pisa, Italy.; EndoCAS Center, Department of Translational Research and of New Surgical and Medical Technologies, University of Pisa, Pisa, Italy., Chatterjee S; Data and Knowledge Engineering Group, Faculty of Computer Science, Otto von Guericke University Magdeburg, Magdeburg, Germany.; Genomics Research Centre, Human Technopole, Milan, Italy., Dubost F; Stanford University, Stanford, CA, USA., Schreiber S; German Centre for Neurodegenerative Disease, Magdeburg, Germany.; Centre for Behavioural Brain Sciences, Magdeburg, Germany.; Department of Neurology, Medical Faculty, University Hospital of Magdeburg, Magdeburg, Germany., Mattern H; German Centre for Neurodegenerative Disease, Magdeburg, Germany.; Centre for Behavioural Brain Sciences, Magdeburg, Germany.; Department of Biomedical Magnetic Resonance, Otto von Guericke University Magdeburg, Magdeburg, Germany., Speck O; German Centre for Neurodegenerative Disease, Magdeburg, Germany.; Centre for Behavioural Brain Sciences, Magdeburg, Germany.; Department of Biomedical Magnetic Resonance, Otto von Guericke University Magdeburg, Magdeburg, Germany., Haehn D; University of Massachusetts Boston, Boston, MA, USA., John C; Ecubed Solutions, Bensheim, Germany., Nürnberger A; Centre for Behavioural Brain Sciences, Magdeburg, Germany.; Data and Knowledge Engineering Group, Faculty of Computer Science, Otto von Guericke University Magdeburg, Magdeburg, Germany., Pedrosa J; Institute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.; Faculty of Engineering, University of Porto (FEUP), Porto, Portugal., Ferreira C; Institute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.; Faculty of Engineering, University of Porto (FEUP), Porto, Portugal., Aresta G; Christian Doppler Lab for Artificial Intelligence in Retina, Department of Ophthalmology and Optometry, Medical University of Vienna, Vienna, Austria., Cunha A; Institute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.; Universidade of Trás-os-Montes and Alto Douro (UTAD), Vila Real, Portugal., Campilho A; Institute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.; Faculty of Engineering, University of Porto (FEUP), Porto, Portugal., Suter Y; ARTORG Center for Biomedical Engineering Research, University of Bern, Bern, Switzerland., Garcia J; Center for Biomedical Image Computing and Analytics (CBICA), Perelman School of Medicine, University of Pennsylvania, Philadelphia, USA., Lalande A; ICMUB Laboratory, Faculty of Medicine, CNRS UMR 6302, University of Burgundy, Dijon, France.; Medical Imaging Department, University Hospital of Dijon, Dijon, France., Vandenbossche V; Department of Human Structure and Repair, Ghent University, Ghent, Belgium., Van Oevelen A; Department of Human Structure and Repair, Ghent University, Ghent, Belgium., Duquesne K; Department of Human Structure and Repair, Ghent University, Ghent, Belgium., Mekhzoum H; Department of Electronics and Informatics (ETRO), Vrije Universiteit Brussel, Brussels, Belgium., Vandemeulebroucke J; Department of Electronics and Informatics (ETRO), Vrije Universiteit Brussel, Brussels, Belgium., Audenaert E; Department of Human Structure and Repair, Ghent University, Ghent, Belgium., Krebs C; Department of Cellular and Physiological Sciences, Life Sciences Centre, University of British Columbia, Vancouver, BC, Canada., van Leeuwen T; Department of Development & Regeneration, KU Leuven Campus Kulak, Kortrijk, Belgium., Vereecke E; Department of Development & Regeneration, KU Leuven Campus Kulak, Kortrijk, Belgium., Heidemeyer H; Institute of Medical Informatics, University Hospital RWTH Aachen, Aachen, Germany., Röhrig R; Institute of Medical Informatics, University Hospital RWTH Aachen, Aachen, Germany., Hölzle F; Department of Oral and Maxillofacial Surgery, University Hospital RWTH Aachen, Aachen, Germany., Badeli V; Institute of Fundamentals and Theory in Electrical Engineering, Graz University of Technology, Graz, Austria., Krieger K; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany., Gunzer M; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany.; Institute for Experimental Immunology and Imaging, University Hospital, University Duisburg-Essen, Essen, Germany., Chen J; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany., van Meegdenburg T; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Faculty of Statistics, Technical University Dortmund, Dortmund, Germany., Dada A; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Balzer M; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Fragemann J; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Jonske F; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Rempe M; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Malorodov S; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Bahnsen FH; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Seibold C; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Jaus A; Computer Vision for Human-Computer Interaction Lab, Department of Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany., Marinov Z; Computer Vision for Human-Computer Interaction Lab, Department of Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany., Jaeger PF; German Cancer Research Center (DKFZ) Heidelberg, Interactive Machine Learning Group, Heidelberg, Germany.; Helmholtz Imaging, DKFZ Heidelberg, Heidelberg, Germany., Stiefelhagen R; Computer Vision for Human-Computer Interaction Lab, Department of Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany., Santos AS; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Center Algoritmi, LASI, University of Minho, Braga, Portugal., Lindo M; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Center Algoritmi, LASI, University of Minho, Braga, Portugal., Ferreira A; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Center Algoritmi, LASI, University of Minho, Braga, Portugal., Alves V; Center Algoritmi, LASI, University of Minho, Braga, Portugal., Kamp M; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Cancer Research Center Cologne Essen (CCCE), University Medicine Essen (AöR), Essen, Germany.; Institute for Neuroinformatics, Ruhr University Bochum, Bochum, Germany.; Department of Data Science & AI, Monash University, Clayton, VIC, Australia., Abourayya A; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Institute for Neuroinformatics, Ruhr University Bochum, Bochum, Germany., Nensa F; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Institute of Diagnostic and Interventional Radiology and Neuroradiology, University Hospital Essen (AöR), Essen, Germany., Hörst F; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Cancer Research Center Cologne Essen (CCCE), University Medicine Essen (AöR), Essen, Germany., Brehmer A; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Heine L; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Cancer Research Center Cologne Essen (CCCE), University Medicine Essen (AöR), Essen, Germany., Hanusrichter Y; Department of Tumour Orthopaedics and Revision Arthroplasty, Orthopaedic Hospital Volmarstein, Wetter, Germany.; Center for Musculoskeletal Surgery, University Hospital of Essen, Essen, Germany., Weßling M; Department of Tumour Orthopaedics and Revision Arthroplasty, Orthopaedic Hospital Volmarstein, Wetter, Germany.; Center for Musculoskeletal Surgery, University Hospital of Essen, Essen, Germany., Dudda M; Department of Trauma, Hand and Reconstructive Surgery, University Hospital Essen, Essen, Germany.; Department of Orthopaedics and Trauma Surgery, BG-Klinikum Duisburg, University of Duisburg-Essen, Essen , Germany., Podleska LE; Department of Tumor Orthopedics and Sarcoma Surgery, University Hospital Essen (AöR), Essen, Germany., Fink MA; Clinic for Diagnostic and Interventional Radiology, University Hospital Heidelberg, Heidelberg, Germany., Keyl J; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany., Tserpes K; Department of Informatics and Telematics, Harokopio University of Athens, Tavros, Greece., Kim MS; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Institute of Diagnostic and Interventional Radiology and Neuroradiology, University Hospital Essen (AöR), Essen, Germany.; Cancer Research Center Cologne Essen (CCCE), University Medicine Essen (AöR), Essen, Germany., Elhabian S; Scientific Computing and Imaging Institute, University of Utah, Salt Lake City, USA., Lamecker H; Stryker Berlin GmbH, Germany., Zukić D; Medical Computing, Kitware Inc., Carrboro, NC, USA., Paniagua B; Medical Computing, Kitware Inc., Carrboro, NC, USA., Wachinger C; Lab for Artificial Intelligence in Medical Imaging, Department of Radiology, Technical University Munich, Munich, Germany., Urschler M; Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Graz, Austria., Duong L; Department of Software and IT Engineering, Ecole de Technologie Superieure, Montreal, Quebec, Canada., Wasserthal J; Clinic of Radiology & Nuclear Medicine, University Hospital Basel, Basel, Switzerland., Hoyer PF; Pediatric Clinic II, University Children's Hospital Essen, University Duisburg-Essen, Essen, Germany., Basu O; Pediatric Clinic III, University Children's Hospital Essen, University Duisburg-Essen, Essen, Germany.; Center for Virtual and Extended Reality in Medicine (ZvRM), University Hospital Essen, University Medicine Essen, Essen, Germany., Maal T; Radboudumc 3D-Lab , Department of Oral and Maxillofacial Surgery , Radboud University Nijmegen Medical Centre, Nijmegen , The Netherlands., Witjes MJH; 3D Lab, Department of Oral and Maxillofacial Surgery, University Medical Center Groningen, Groningen, the Netherlands., Schiele G; Intelligent Embedded Systems Lab, University of Duisburg-Essen, Bismarckstraße 90, 47057 Duisburg, Germany., Chang TC; MRL, Merck & Co., Inc., Rahway, NJ 07065, USA., Ahmadi SA; NVIDIA GmbH, Bavaria Towers - Blue Tower, Munich, Germany., Luo P; University of Hongkong, Pok Fu Lam, Hong Kong, People's Republic of China., Menze B; Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland., Reyes M; ARTORG Center for Biomedical Engineering Research, University of Bern, Bern, Switzerland.; Department of Radiation Oncology, University Hospital Bern, University of Bern, Bern, Switzerland., Deserno TM; Peter L. Reichertz Institute for Medical Informatics of TU Braunschweig and Hannover Medical School, Braunschweig, Germany., Davatzikos C; Center for Biomedical Image Computing and Analytics , Penn Neurodegeneration Genomics Center , University of Pennsylvania, Philadelphia , PA , USA ; and Center for AI and Data Science for Integrated Diagnostics, University of Pennsylvania, Philadelphia, PA, USA., Puladi B; Department of Oral and Maxillofacial Surgery, University Hospital RWTH Aachen, Aachen, Germany.; Institute of Medical Informatics, University Hospital RWTH Aachen, Aachen, Germany., Fua P; Computer Vision Laboratory, Swiss Federal Institute of Technology Lausanne (EPFL), Lausanne, Switzerland., Yuille AL; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Kleesiek J; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; German Cancer Consortium (DKTK), Partner Site Essen, Essen, Germany.; Department of Physics, TU Dortmund University, Dortmund, Germany.; Cancer Research Center Cologne Essen (CCCE), University Medicine Essen (AöR), Essen, Germany., Egger J; Institute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.; Institute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.; Computer Algorithms for Medicine Laboratory (Cafe), Graz, Austria.; Cancer Research Center Cologne Essen (CCCE), University Medicine Essen (AöR), Essen, Germany.; Center for Virtual and Extended Reality in Medicine (ZvRM), University Hospital Essen, University Medicine Essen, Essen, Germany.
Source:
Biomedizinische Technik. Biomedical engineering [Biomed Tech (Berl)] 2024 Dec 30; Vol. 70 (1), pp. 71-90. Date of Electronic Publication: 2024 Dec 30 (Print Publication: 2025).
Publication Type:
Journal Article
Language:
English
Journal Info:
Publisher: Walter de Gruyter Publishers Country of Publication: Germany NLM ID: 1262533 Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1862-278X (Electronic) Linking ISSN: 00135585 NLM ISO Abbreviation: Biomed Tech (Berl) Subsets: MEDLINE
Imprint Name(s):
Publication: 2006- : Berlin : Walter de Gruyter Publishers
Original Publication: Berlin, Schiele & Schön; Stuttgart, Georg Thieme.
Original Publication: Berlin, Schiele & Schön; Stuttgart, Georg Thieme.
MeSH Terms:
References:
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Grant Information:
R01 EB037669 United States EB NIBIB NIH HHS; R01 HL128785 United States HL NHLBI NIH HHS
Contributed Indexing:
Keywords: 3D medical shapes; anatomy education; augmented reality; benchmark; shapeomics; virtual reality
Entry Date(s):
Date Created: 20241229 Date Completed: 20250429 Latest Revision: 20251002
Update Code:
20260130
DOI:
10.1515/bmt-2024-0396
PMID:
39733351
Database:
MEDLINE
Weitere Informationen
Objectives: The shape is commonly used to describe the objects. State-of-the-art algorithms in medical imaging are predominantly diverging from computer vision, where voxel grids, meshes, point clouds, and implicit surface models are used. This is seen from the growing popularity of ShapeNet (51,300 models) and Princeton ModelNet (127,915 models). However, a large collection of anatomical shapes (e.g., bones, organs, vessels) and 3D models of surgical instruments is missing.
Methods: We present MedShapeNet to translate data-driven vision algorithms to medical applications and to adapt state-of-the-art vision algorithms to medical problems. As a unique feature, we directly model the majority of shapes on the imaging data of real patients. We present use cases in classifying brain tumors, skull reconstructions, multi-class anatomy completion, education, and 3D printing.
Results: By now, MedShapeNet includes 23 datasets with more than 100,000 shapes that are paired with annotations (ground truth). Our data is freely accessible via a web interface and a Python application programming interface and can be used for discriminative, reconstructive, and variational benchmarks as well as various applications in virtual, augmented, or mixed reality, and 3D printing.
Conclusions: MedShapeNet contains medical shapes from anatomy and surgical instruments and will continue to collect data for benchmarks and applications. The project page is: https://medshapenet.ikim.nrw/.
(© 2024 Walter de Gruyter GmbH, Berlin/Boston.)