• The Updated Genome Warehouse:...

*Result*: The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion.

Title:
The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion.
Authors:
Ma Y (马英克); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China., Zhao X (赵学彤); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China., Jia Y (贾曜恺); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China., Han Z (韩镇先); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China., Yu C (俞彩霞); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China., Fan Z (范卓静); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China., Zhang Z (章张); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100049, China., Xiao J (肖景发); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100049, China., Zhao W (赵文明); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100049, China., Bao Y (鲍一明); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100049, China., Chen M (陈梅丽); National Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.; Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100049, China.
Source:
Genomics, proteomics & bioinformatics [Genomics Proteomics Bioinformatics] 2025 May 10; Vol. 23 (1).
Publication Type:
Journal Article
Language:
English
Journal Info:
Publisher: Oxford University Press on behalf of Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation and Genetics Society of China Country of Publication: England NLM ID: 101197608 Publication Model: Print Cited Medium: Internet ISSN: 2210-3244 (Electronic) Linking ISSN: 16720229 NLM ISO Abbreviation: Genomics Proteomics Bioinformatics Subsets: MEDLINE
Imprint Name(s):
Publication: 2024- : [Oxford] : Oxford University Press on behalf of Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation and Genetics Society of China
Original Publication: Beijing, China : Science Press and Elsevier
MeSH Terms:
Genomics*/methods , Databases, Genetic* , Computer Security*, Humans ; Genome, Human
References:
Nucleic Acids Res. 2024 Jan 5;52(D1):D762-D769. (PMID: 37962425)
Genomics Proteomics Bioinformatics. 2021 Aug;19(4):584-589. (PMID: 34175476)
Nucleic Acids Res. 2022 Jan 7;50(D1):D785-D794. (PMID: 34520557)
Genomics Proteomics Bioinformatics. 2021 Aug;19(4):578-583. (PMID: 34400360)
Nucleic Acids Res. 2024 Jan 5;52(D1):D747-D755. (PMID: 37930867)
Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45. (PMID: 26553804)
Nucleic Acids Res. 2021 Jan 8;49(D1):D121-D124. (PMID: 33166387)
Nucleic Acids Res. 2024 Jan 5;52(D1):D891-D899. (PMID: 37953337)
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Nucleic Acids Res. 2024 Jan 5;52(D1):D18-D32. (PMID: 38018256)
Genomics Proteomics Bioinformatics. 2023 Oct;21(5):900-903. (PMID: 37832784)
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Innovation (Camb). 2022 Aug 01;3(5):100296. (PMID: 36039088)
Contributed Indexing:
Keywords: GenBank and RefSeq; Genome Warehouse; Genome annotation; Genome assembly; Genome database
Entry Date(s):
Date Created: 20250220 Date Completed: 20250703 Latest Revision: 20250705
Update Code:
20260130
PubMed Central ID:
PMC12221864
DOI:
10.1093/gpbjnl/qzaf010
PMID:
39977364
Database:
MEDLINE

*Further Information*

*The Genome Warehouse (GWH), accessible at https://ngdc.cncb.ac.cn/gwh, is an extensively-utilized public repository dedicated to the deposition, management, and sharing of genome assembly sequences, annotations, and metadata. This paper highlights noteworthy enhancements to the GWH since the 2021 version, emphasizing substantial advancements in web interfaces for data submission, database functionality updates, and resource integration. Key updates include the reannotation of released prokaryotic genomes, mirroring of genome resources from National Center for Biotechnology Information (NCBI) GenBank and Reference Sequence Database (RefSeq), integration of Poxviridae sequences, implementation of an online batch submission system, enhancements to the quality control system, advanced search capabilities, and the introduction of a controlled-access mechanism for human genome data. These improvements collectively enhance the ease and security of data submission and access as well as genome data value, thereby improving convenience and utility for researchers in the genomics field.
(© The Author(s) 2025. Published by Oxford University Press and Science Press on behalf of the Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation and Genetics Society of China.)*