Treffer: Molreac-Oxi: An end-to-end deep learning-quantum chemistry platform for •OH reactivity (kOH), pathways, and active-site insight.

Title:
Molreac-Oxi: An end-to-end deep learning-quantum chemistry platform for •OH reactivity (kOH), pathways, and active-site insight.
Authors:
Shao F; College of Environmental Science and Engineering, Tongji University, Shanghai, 200092, PR China., Li W; College of Environmental Science and Engineering, Tongji University, Shanghai, 200092, PR China. Electronic address: 123lwyktz@tongji.edu.cn., Liang Z; College of Environmental Science and Engineering, Tongji University, Shanghai, 200092, PR China., Wang C; Shenzhen Water and Environment Group Co., Ltd, Shenzhen, Guangdong Province, 518172, PR China., Li T; Shenzhen Water and Environment Group Co., Ltd, Shenzhen, Guangdong Province, 518172, PR China., Wei Z; Fuzhou Water Group Co., Ltd, Fuzhou, Fujian Province, 350005, PR China., Xu X; Fuzhou Water Group Co., Ltd, Fuzhou, Fujian Province, 350005, PR China.
Source:
Environmental research [Environ Res] 2026 Mar 15; Vol. 293, pp. 123763. Date of Electronic Publication: 2026 Jan 12.
Publication Type:
Journal Article
Language:
English
Journal Info:
Publisher: Elsevier Country of Publication: Netherlands NLM ID: 0147621 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1096-0953 (Electronic) Linking ISSN: 00139351 NLM ISO Abbreviation: Environ Res Subsets: MEDLINE
Imprint Name(s):
Publication: <2000- > : Amsterdam : Elsevier
Original Publication: New York, Academic Press.
Contributed Indexing:
Keywords: Deep learning; Environmental chemistry; Hydroxyl radical (•OH); Pollutant degradation kinetics; Quantum-chemical descriptors; k(OH) rate constant prediction
Substance Nomenclature:
3352-57-6 (Hydroxyl Radical)
0 (Environmental Pollutants)
Entry Date(s):
Date Created: 20260114 Date Completed: 20260207 Latest Revision: 20260207
Update Code:
20260208
DOI:
10.1016/j.envres.2026.123763
PMID:
41534583
Database:
MEDLINE

Weitere Informationen

To address the long-standing challenge of efficiently evaluating reaction rate constants (k<subscript>OH</subscript>) for pollutant-hydroxyl radical (•OH) systems in environmental pollution control, a hybrid meta-model framework is introduced that fuses deep pretrained models with traditional machine learning, together with an integrated platform that unifies prediction, mechanistic inference, and online analysis. From DFT-optimized structures, multidimensional quantum-chemical descriptors were extracted for 968 pollutants, and a large-scale pretrained 3D molecular model (Uni-Mol) was fine-tuned. The fine-tuned Uni-Mol model was stacked alongside first-layer learners-Random Forest, Gradient Boosting, XGBoost, LightGBM, and CatBoost-whose outputs were fused by a regularized linear meta-learner to estimate k<subscript>OH</subscript>. The stacked-ensemble attains R<sup>2</sup> = 0.806 with a lower MAE than any single learner, and parity plots and residual diagnostics for log<subscript>10</subscript>(k<subscript>OH</subscript>) indicate limited bias across major chemical classes. Interpretability is enhanced with SHAP (SHapley Additive exPlanations) and conditional, correlation-aware effect estimates; where appropriate, bootstrap-supported thresholds are reported to avoid over-interpreting collinear descriptors. To compensate for the limited PES (potential-energy-surface) resolution of static structure-property models, a PES-Learn model trained on 72,502 organic pollutants is coupled to a nanoreactor MD workflow so that mechanism-level hypotheses can be generated at near-DFT fidelity and orders-of-magnitude lower cost; on a GPU, inference achieves speedups of up to ∼3.1 × 10<sup>4</sup> over conventional DFT. These models and CDFT analysis are encapsulated in an online platform (https://www.bohrium.com/apps/molreac-oxi), providing a closed-loop workflow from rapid batch screening to reaction-pathway and active-site analysis.
(Copyright © 2026 Elsevier Inc. All rights reserved.)

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.